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rRDPData

This is the development version of rRDPData; for the stable release version, see rRDPData.

Databases for the Default RDP Classifier


Bioconductor version: Development (3.19)

The package provides the data for the RDP Classifier 2.14 released in August 2023. It contains the latest bacterial and archaeal taxonomy training set No. 19 as described in Wang Q, Cole JR. 2024. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc 0:e01063-23.

Author: Michael Hahsler [aut, cre] , Nagar Anurag [aut]

Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>

Citation (from within R, enter citation("rRDPData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rRDPData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, MicrobiomeData, RNASeqData, SequencingData
Version 1.23.1
License GPL-2
Depends rRDP
Imports
System Requirements
URL https://github.com/mhahsler/rRDP
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rRDPData_1.23.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/rRDPData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rRDPData
Package Short Url https://bioconductor.org/packages/rRDPData/
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