scMultiome
This is the development version of scMultiome; for the stable release version, see scMultiome.
Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets
Bioconductor version: Development (3.20)
Single cell multiome data, containing chromatin accessibility (scATAC-seq) and gene expression (scRNA-seq) information analyzed with the ArchR package and presented as MultiAssayExperiment objects.
Author: Xiaosai Yao [cre, aut] , Aleksander Chlebowski [aut], Aaron Lun [aut], Shiqi Xie [ctb], Tomasz Włodarczyk [aut]
Maintainer: Xiaosai Yao <xiaosai.yao at gmail.com>
citation("scMultiome")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scMultiome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scMultiome")
scMultiome tutorial | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellCulture, ExperimentData, ExperimentHub, ExpressionData, GEO, Homo_sapiens_Data, PackageTypeData, SequencingData, SingleCellData, Tissue |
Version | 1.5.7 |
License | CC BY-SA 4.0 |
Depends | AnnotationHub, ExperimentHub(>= 2.8.1), MultiAssayExperiment, SingleCellExperiment, SummarizedExperiment |
Imports | AzureStor, GenomicRanges, HDF5Array, S4Vectors, checkmate, methods, rhdf5, alabaster.matrix |
System Requirements | |
URL |
See More
Suggests | BiocGenerics, IRanges, Matrix, knitr, rmarkdown, rstudioapi, testthat (>= 3.0.0), devtools, BiocStyle, ExperimentHubData |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | epiregulon |
Suggests Me | epiregulon.extra |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | scMultiome_1.5.7.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/scMultiome |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scMultiome |
Package Short Url | https://bioconductor.org/packages/scMultiome/ |
Package Downloads Report | Download Stats |