Registration Open for Bioc2024
Early registration discount pricing ends May 31!

scaeData

This is the development version of scaeData; for the stable release version, see scaeData.

Data Package for SingleCellAlleleExperiment


Bioconductor version: Development (3.20)

Contains default datasets used by the Bioconductor package SingleCellAlleleExperiment. The raw FASTQ files were sourced from publicly accessible datasets provided by 10x Genomics. Subsequently, our scIGD snakemake workflow was employed to process these FASTQ files. The resulting output from scIGD constitutes to the contents of this data package.

Author: Ahmad Al Ajami [aut, cre] , Jonas Schuck [aut] , Federico Marini [aut] , Katharina Imkeller [aut]

Maintainer: Ahmad Al Ajami <alajami at med.uni-frankfurt.de>

Citation (from within R, enter citation("scaeData")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scaeData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scaeData")
scaeData User Guide HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, SingleCellData
Version 1.1.1
License MIT + file LICENSE
Depends R (>= 4.4.0)
Imports ExperimentHub
System Requirements
URL https://github.com/AGImkeller/scaeData
Bug Reports https://github.com/AGImkeller/scIGD/issues
See More
Suggests knitr, rmarkdown, markdown, SingleCellAlleleExperiment, Matrix, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me SingleCellAlleleExperiment
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scaeData_1.1.1.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/scaeData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scaeData
Package Short Url https://bioconductor.org/packages/scaeData/
Package Downloads Report Download Stats