spatialDmelxsim

DOI: 10.18129/B9.bioc.spatialDmelxsim    

This is the development version of spatialDmelxsim; for the stable release version, see spatialDmelxsim.

Spatial allelic expression counts for fly cross embryo

Bioconductor version: Development (3.15)

Spatial allelic expression counts from Combs & Fraser (2018), compiled into a SummarizedExperiment object. This package contains data of allelic expression counts of spatial slices of a fly embryo, a Drosophila melanogaster x Drosophila simulans cross. See the CITATION file for the data source, and the associated script for how the object was constructed from publicly available data.

Author: Michael Love [aut, cre]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("spatialDmelxsim")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("spatialDmelxsim")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spatialDmelxsim")

 

HTML R Script spatialDmelxsim
PDF   Reference Manual
Text   NEWS

Details

biocViews Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, GEO, RNASeqData, SequencingData
Version 1.1.0
License GPL-3
Depends R (>= 4.1), ExperimentHub, SummarizedExperiment
Imports utils
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/mikelove/spatialDmelxsim
BugReports https://github.com/mikelove/spatialDmelxsim/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package spatialDmelxsim_1.1.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/spatialDmelxsim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/spatialDmelxsim
Package Short Url https://bioconductor.org/packages/spatialDmelxsim/
Package Downloads Report Download Stats

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