Welcome to the new bioconductor.org!

tartare

This is the development version of tartare; for the stable release version, see tartare.

Raw ground spectra recorded on Thermo Fisher Scientific mass spectrometers


Bioconductor version: Development (3.19)

Provides raw files recorded on different Liquid Chromatography Mass Spectrometry (LC-MS) instruments. All included MS instruments are manufactured by Thermo Fisher Scientific and belong to the Orbitrap Tribrid or Q Exactive Orbitrap family of instruments. Despite their common origin and shared hardware components, e.g., Orbitrap mass analyser, the above instruments tend to write data in different "dialects" in a shared binary file format (.raw). The intention behind tartare is to provide complex but slim real-world files that can be used to make code robust with respect to this diversity. In other words, it is intended for enhanced unit testing. The package is considered to be used with the rawrr package and the Spectra MsBackends.

Author: Christian Panse [aut, cre] , Tobias Kockmann [aut]

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("tartare")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("tartare")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tartare")
make and use tartare data HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExperimentHub, MassSpectrometryData
Version 1.17.0
License GPL-3
Depends R (>= 4.1), AnnotationHub(>= 2.16), ExperimentHub(>= 1.0)
Imports utils
System Requirements
URL https://github.com/cpanse/tartare
Bug Reports https://github.com/cpanse/tartare/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, tools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me MsBackendRawFileReader, rawrr
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tartare_1.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/tartare
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tartare
Package Short Url https://bioconductor.org/packages/tartare/
Package Downloads Report Download Stats