drawProteins
This is the released version of drawProteins; for the devel version, see drawProteins.
Package to Draw Protein Schematics from Uniprot API output
Bioconductor version: Release (3.23)
This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.
Author: Paul Brennan [aut, cre]
Maintainer: Paul Brennan <brennanpincardiff at gmail.com>
citation("drawProteins")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("drawProteins")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("drawProteins")| Using drawProteins | HTML | R Script |
| Using extract_transcripts in drawProteins | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | FunctionalPrediction, Proteomics, Software, Visualization |
| Version | 1.32.0 |
| In Bioconductor since | BioC 3.7 (R-3.5) (8.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0) |
| Imports | ggplot2, httr, dplyr, readr, tidyr |
| System Requirements | |
| URL | https://github.com/brennanpincardiff/drawProteins |
| Bug Reports | https://github.com/brennanpincardiff/drawProteins/issues/new |
See More
| Suggests | covr, testthat, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | factR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | drawProteins_1.32.0.tar.gz |
| Windows Binary (x86_64) | drawProteins_1.32.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | drawProteins_1.32.0.tgz |
| macOS Binary (sonoma-arm64) | drawProteins_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/drawProteins |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/drawProteins |
| Bioc Package Browser | https://code.bioconductor.org/browse/drawProteins/ |
| Package Short Url | https://bioconductor.org/packages/drawProteins/ |
| Package Downloads Report | Download Stats |