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BRAIN

Baffling Recursive Algorithm for Isotope distributioN calculations


Bioconductor version: Release (3.18)

Package for calculating aggregated isotopic distribution and exact center-masses for chemical substances (in this version composed of C, H, N, O and S). This is an implementation of the BRAIN algorithm described in the paper by J. Claesen, P. Dittwald, T. Burzykowski and D. Valkenborg.

Author: Piotr Dittwald, with contributions of Dirk Valkenborg and Jurgen Claesen

Maintainer: Piotr Dittwald <piotr.dittwald at mimuw.edu.pl>

Citation (from within R, enter citation("BRAIN")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BRAIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BRAIN")
BRAIN Usage PDF R Script
Reference Manual PDF

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.48.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL-2
Depends R (>= 2.8.1), PolynomF, Biostrings, lattice
Imports
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Suggests Me cleaver, RforProteomics, synapter
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BRAIN_1.48.0.tar.gz
Windows Binary BRAIN_1.48.0.zip (64-bit only)
macOS Binary (x86_64) BRAIN_1.48.0.tgz
macOS Binary (arm64) BRAIN_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BRAIN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BRAIN
Bioc Package Browser https://code.bioconductor.org/browse/BRAIN/
Package Short Url https://bioconductor.org/packages/BRAIN/
Package Downloads Report Download Stats