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Create Copy-Number Plots using karyoploteR functionality

Bioconductor version: Release (3.19)

CopyNumberPlots have a set of functions extending karyoploteRs functionality to create beautiful, customizable and flexible plots of copy-number related data.

Author: Bernat Gel <bgel at> and Miriam Magallon <mmagallon at>

Maintainer: Bernat Gel <bgel at>

Citation (from within R, enter citation("CopyNumberPlots")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

CopyNumberPlots vignette HTML R Script
Reference Manual PDF


biocViews CopyNumberVariation, Coverage, DNASeq, DataImport, OneChannel, Sequencing, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License Artistic-2.0
Depends R (>= 3.6), karyoploteR
Imports regioneR, IRanges, Rsamtools, SummarizedExperiment, VariantAnnotation, methods, stats, GenomeInfoDb, GenomicRanges, cn.mops, rhdf5, utils
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Suggests BiocStyle, knitr, rmarkdown, panelcn.mops, BSgenome.Hsapiens.UCSC.hg19.masked, DNAcopy, testthat
Linking To
Depends On Me
Imports Me CNVfilteR, CNViz
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package CopyNumberPlots_1.20.0.tar.gz
Windows Binary
macOS Binary (x86_64) CopyNumberPlots_1.20.0.tgz
macOS Binary (arm64) CopyNumberPlots_1.20.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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