CytoPipelineGUI

DOI: 10.18129/B9.bioc.CytoPipelineGUI  

GUI's for visualization of flow cytometry data analysis pipelines

Bioconductor version: Release (3.18)

This package is the companion of the `CytoPipeline` package. It provides GUI's (shiny apps) for the visualization of flow cytometry data analysis pipelines that are run with `CytoPipeline`. Two shiny applications are provided, i.e. an interactive flow frame assessment and comparison tool and an interactive scale transformations visualization and adjustment tool.

Author: Philippe Hauchamps [aut, cre] , Laurent Gatto [aut] , Dan Lin [ctb]

Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CytoPipelineGUI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CytoPipelineGUI")

 

HTML	R Script	CytoPipelineGUI : visualization of Flow Cytometry Data Analysis Pipelines run with CytoPipeline
HTML	R Script	Demonstration of the CytoPipeline R package suite functionalities
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FlowCytometry, GUI, ImmunoOncology, Preprocessing, QualityControl, ShinyApps, Software, Visualization, WorkflowStep
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	GPL (>=3) | file LICENSE
Depends	R (>= 4.3), CytoPipeline
Imports	shiny, plotly, ggplot2, flowCore
LinkingTo
Suggests	testthat (>= 3.0.0), vdiffr, diffviewer, knitr, rmarkdown, BiocStyle, patchwork
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CytoPipelineGUI_1.0.0.tar.gz
Windows Binary	CytoPipelineGUI_1.0.0.zip
macOS Binary (x86_64)	CytoPipelineGUI_1.0.0.tgz
macOS Binary (arm64)	CytoPipelineGUI_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CytoPipelineGUI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CytoPipelineGUI
Bioc Package Browser	https://code.bioconductor.org/browse/CytoPipelineGUI/
Package Short Url	https://bioconductor.org/packages/CytoPipelineGUI/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive