ExploreModelMatrix

DOI: 10.18129/B9.bioc.ExploreModelMatrix    

Graphical Exploration of Design Matrices

Bioconductor version: Release (3.11)

Given a sample data table and a design formula, generate an interactive application to explore the resulting design matrix.

Author: Charlotte Soneson [aut, cre] , Federico Marini [aut] , Michael Love [aut] , Florian Geier [aut] , Michael Stadler [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("ExploreModelMatrix")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExploreModelMatrix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExploreModelMatrix")

 

HTML R Script ExploreModelMatrix
HTML R Script ExploreModelMatrix-deploy
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DifferentialExpression, ExperimentalDesign, Regression, Software
Version 1.0.2
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License MIT + file LICENSE
Depends
Imports shiny, shinydashboard, DT, cowplot, utils, dplyr, magrittr, tidyr, ggplot2, stats, methods, rintrojs, scales, tibble, MASS, limma, S4Vectors
LinkingTo
Suggests testthat (>= 2.1.0), knitr, rmarkdown, htmltools, BiocStyle
SystemRequirements
Enhances
URL https://github.com/csoneson/ExploreModelMatrix
BugReports https://github.com/csoneson/ExploreModelMatrix/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExploreModelMatrix_1.0.2.tar.gz
Windows Binary ExploreModelMatrix_1.0.2.zip
macOS 10.13 (High Sierra) ExploreModelMatrix_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExploreModelMatrix
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExploreModelMatrix
Package Short Url https://bioconductor.org/packages/ExploreModelMatrix/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

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