DOI: 10.18129/B9.bioc.GNOSIS  

Genomics explorer using statistical and survival analysis in R

Bioconductor version: Release (3.18)

GNOSIS incorporates a range of R packages enabling users to efficiently explore and visualise clinical and genomic data obtained from cBioPortal. GNOSIS uses an intuitive GUI and multiple tab panels supporting a range of functionalities. These include data upload and initial exploration, data recoding and subsetting, multiple visualisations, survival analysis, statistical analysis and mutation analysis, in addition to facilitating reproducible research.

Author: Lydia King [aut, cre] , Marcel Ramos [ctb]

Maintainer: Lydia King <l.king18 at>

Citation (from within R, enter citation("GNOSIS")):


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HTML R Script GNOSIS Overview
PDF   Reference Manual
Text   NEWS
Video   GNOSIS: an R Shiny app supporting cancer genomics survival analysis with cBioPortal


biocViews GUI, ShinyApps, Software, Survival
Version 1.0.0
In Bioconductor since BioC 3.18 (R-4.3) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.3.0), shiny, shinydashboard, shinydashboardPlus, dashboardthemes, shinyWidgets, shinymeta, tidyverse,, maftools
Imports DT, fontawesome, shinycssloaders, cBioPortalData, shinyjs, reshape2, RColorBrewer, survival, survminer, stats, compareGroups, rpart, partykit, DescTools, car, rstatix, fabricatr, shinylogs, magrittr
Suggests BiocStyle, knitr, rmarkdown
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Source Package GNOSIS_1.0.0.tar.gz
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macOS Binary (x86_64) GNOSIS_1.0.0.tgz
macOS Binary (arm64) GNOSIS_1.0.0.tgz
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