DOI: 10.18129/B9.bioc.GOstats    

Tools for manipulating GO and microarrays

Bioconductor version: Release (3.6)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: Robert Gentleman [aut], Seth Falcon [ctb], Robert Castelo [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

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PDF R Script Hypergeometric tests for less common model organisms
PDF R Script Hypergeometric Tests Using GOstats
PDF R Script Visualizing Data Using GOstats
PDF   Reference Manual


biocViews Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version 2.44.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13 years)
License Artistic-2.0
Depends R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.43.2), graph
Imports methods, stats, stats4, AnnotationDbi(>= 0.0.89), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), AnnotationForge, Rgraphviz
Suggests hgu95av2.db(>= 1.13.0), ALL, multtest, genefilter, RColorBrewer, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
Depends On Me MineICA, RDAVIDWebService
Imports Me affycoretools, attract, categoryCompare, facopy, ideal, MIGSA, mvGST, pcaExplorer, ProCoNA, ReportingTools, systemPipeR
Suggests Me BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, miRLAB, MLP, MmPalateMiRNA, oneChannelGUI, phenoDist, qpgraph, RnBeads, safe
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Source Package GOstats_2.44.0.tar.gz
Windows Binary GOstats_2.44.0.zip
Mac OS X 10.11 (El Capitan) GOstats_2.44.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOstats
Package Short Url http://bioconductor.org/packages/GOstats/
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