GRmetrics

DOI: 10.18129/B9.bioc.GRmetrics    

Calculate growth-rate inhibition (GR) metrics

Bioconductor version: Release (3.7)

Functions for calculating and visualizing growth-rate inhibition (GR) metrics.

Author: Nicholas Clark

Maintainer: Nicholas Clark <nicholas.clark00 at gmail.com>, Mario Medvedovic <medvedm at ucmail.uc.edu>

Citation (from within R, enter citation("GRmetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GRmetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRmetrics")

 

HTML R Script GRmetrics: an R package for calculation and visualization of dose-response metrics based on growth rate inhibition
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Software, TimeCourse, Visualization
Version 1.6.1
In Bioconductor since BioC 3.4 (R-3.3) (2 years)
License GPL-3
Depends R (>= 3.3), SummarizedExperiment
Imports drc, plotly, ggplot2, S4Vectors
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://github.com/uc-bd2k/GRmetrics
BugReports https://github.com/uc-bd2k/GRmetrics/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GRmetrics_1.6.1.tar.gz
Windows Binary GRmetrics_1.6.1.zip
Mac OS X 10.11 (El Capitan) GRmetrics_1.6.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GRmetrics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GRmetrics
Package Short Url http://bioconductor.org/packages/GRmetrics/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: