GSReg

DOI: 10.18129/B9.bioc.GSReg    

Gene Set Regulation (GS-Reg)

Bioconductor version: Release (3.7)

A package for gene set analysis based on the variability of expressions as well as a method to detect Alternative Splicing Events . It implements DIfferential RAnk Conservation (DIRAC) and gene set Expression Variation Analysis (EVA) methods. For detecting Differentially Spliced genes, it provides an implementation of the Spliced-EVA (SEVA).

Author: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Elana J. Fertig <ejfertig at jhmi.edu>

Citation (from within R, enter citation("GSReg")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GSReg")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSReg")

 

PDF R Script Working with the GSReg package
PDF   Reference Manual

Details

biocViews AlternativeSplicing, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Pathways, Software
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (4 years)
License GPL-2
Depends R (>= 2.13.1), Homo.sapiens, org.Hs.eg.db, GenomicFeatures, AnnotationDbi
Imports
LinkingTo
Suggests GenomicRanges, GSBenchMark
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GSReg_1.14.0.tar.gz
Windows Binary GSReg_1.14.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GSReg_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GSReg
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GSReg
Package Short Url http://bioconductor.org/packages/GSReg/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: