GateFinder
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
Bioconductor version: Release (3.19)
Given a vector of cluster memberships for a cell population, identifies a sequence of gates (polygon filters on 2D scatter plots) for isolation of that cell type.
Author: Nima Aghaeepour <naghaeep at gmail.com>, Erin F. Simonds <erin.simonds at gmail.com>
Maintainer: Nima Aghaeepour <naghaeep at gmail.com>
Citation (from within R, enter
citation("GateFinder")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GateFinder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GateFinder")
GateFinder | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | CellBiology, Clustering, FlowCytometry, ImmunoOncology, Software |
Version | 1.24.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | Artistic-2.0 |
Depends | |
Imports | splancs, mvoutlier, methods, stats, diptest, flowCore, flowFP |
System Requirements | |
URL |
See More
Suggests | RUnit, BiocGenerics |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GateFinder_1.24.0.tar.gz |
Windows Binary | GateFinder_1.24.0.zip |
macOS Binary (x86_64) | GateFinder_1.24.0.tgz |
macOS Binary (arm64) | GateFinder_1.24.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GateFinder |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GateFinder |
Bioc Package Browser | https://code.bioconductor.org/browse/GateFinder/ |
Package Short Url | https://bioconductor.org/packages/GateFinder/ |
Package Downloads Report | Download Stats |