GeneGeneInteR
Tools for Testing Gene-Gene Interaction at the Gene Level
Bioconductor version: Release (3.19)
The aim of this package is to propose several methods for testing gene-gene interaction in case-control association studies. Such a test can be done by aggregating SNP-SNP interaction tests performed at the SNP level (SSI) or by using gene-gene multidimensionnal methods (GGI) methods. The package also proposes tools for a graphic display of the results.
Author: Mathieu Emily [aut, cre], Nicolas Sounac [ctb], Florian Kroell [ctb], Magalie Houee-Bigot [aut]
Maintainer: Mathieu Emily <mathieu.emily at agrocampus-ouest.fr>
citation("GeneGeneInteR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneGeneInteR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneGeneInteR")
GeneGeneInteR Introduction | R Script | |
Pairwise interaction tests | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneticVariability, Genetics, GenomeWideAssociation, SNP, Software |
Version | 1.30.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
License | GPL (>= 2) |
Depends | R (>= 4.0) |
Imports | snpStats, mvtnorm, Rsamtools, igraph, kernlab, FactoMineR, IRanges, GenomicRanges, data.table, grDevices, graphics, stats, utils, methods |
System Requirements | |
URL |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | GeneGeneInteR_1.30.0.tar.gz |
Windows Binary | GeneGeneInteR_1.30.0.zip (64-bit only) |
macOS Binary (x86_64) | GeneGeneInteR_1.30.0.tgz |
macOS Binary (arm64) | GeneGeneInteR_1.30.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GeneGeneInteR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneGeneInteR |
Bioc Package Browser | https://code.bioconductor.org/browse/GeneGeneInteR/ |
Package Short Url | https://bioconductor.org/packages/GeneGeneInteR/ |
Package Downloads Report | Download Stats |