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ISoLDE

Integrative Statistics of alleLe Dependent Expression


Bioconductor version: Release (3.19)

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Author: Christelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem Kister [aut]

Maintainer: Christelle Reynès <christelle.reynes at igf.cnrs.fr>

Citation (from within R, enter citation("ISoLDE")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ISoLDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF
README Text
NEWS Text

Details

biocViews Epigenetics, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneticVariability, Genetics, ImmunoOncology, MathematicalBiology, MultipleComparison, RNASeq, SNP, Sequencing, Software, Transcription
Version 1.32.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>= 2.0)
Depends R (>= 3.3.0), graphics, grDevices, stats, utils
Imports
System Requirements
URL www.r-project.org
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ISoLDE_1.32.0.tar.gz
Windows Binary ISoLDE_1.32.0.zip
macOS Binary (x86_64) ISoLDE_1.32.0.tgz
macOS Binary (arm64) ISoLDE_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ISoLDE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ISoLDE
Bioc Package Browser https://code.bioconductor.org/browse/ISoLDE/
Package Short Url https://bioconductor.org/packages/ISoLDE/
Package Downloads Report Download Stats