IVAS

This is the released version of IVAS; for the devel version, see IVAS.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

Identification of genetic Variants affecting Alternative Splicing

Bioconductor version: Release (3.23)

Identification of genetic variants affecting alternative splicing.

Author: Seonggyun Han, Sangsoo Kim

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IVAS")):

Seonggyun Han, Sangsoo Kim. IVAS: Identification of genetic Variants affecting Alternative Splicing. doi:10.18129/B9.bioc.IVAS, R package version 2.32.0, https://bioconductor.org/packages/IVAS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IVAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IVAS")

IVAS : Identification of genetic Variants affecting Alternative Splicing	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription
Version	2.32.0
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	GPL-2
Depends	R (> 3.0.0), GenomicFeatures, ggplot2, Biobase
Imports	doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, Seqinfo, ggfortify, grDevices, methods, Matrix, BiocParallel, utils, stats
System Requirements
URL

Suggests	BiocStyle
Linking To
Enhances
Depends On Me	IMAS
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IVAS_2.32.0.tar.gz
Windows Binary (x86_64)	IVAS_2.32.0.zip
macOS Binary (big-sur-x86_64)	IVAS_2.32.0.tgz
macOS Binary (sonoma-arm64)	IVAS_2.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IVAS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IVAS
Package Short Url	https://bioconductor.org/packages/IVAS/
Package Downloads Report	Download Stats