MSstatsBig

DOI: 10.18129/B9.bioc.MSstatsBig  

MSstats Preprocessing for Larger than Memory Data

Bioconductor version: Release (3.18)

MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.

Author: Mateusz Staniak [aut, cre], Devon Kohler [aut]

Maintainer: Mateusz Staniak <mtst at mstaniak.pl>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MSstatsBig")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsBig")

 

HTML	R Script	MSstatsBig Workflow
PDF		Reference Manual

Details

biocViews	MassSpectrometry, Proteomics, Software
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends
Imports	arrow, DBI, dplyr, MSstats, MSstatsConvert, readr, sparklyr, utils
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MSstatsBig_1.0.0.tar.gz
Windows Binary	MSstatsBig_1.0.0.zip
macOS Binary (x86_64)	MSstatsBig_1.0.0.tgz
macOS Binary (arm64)	MSstatsBig_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MSstatsBig
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MSstatsBig
Bioc Package Browser	https://code.bioconductor.org/browse/MSstatsBig/
Package Short Url	https://bioconductor.org/packages/MSstatsBig/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive