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Mergeomics

Integrative network analysis of omics data


Bioconductor version: Release (3.18)

The Mergeomics pipeline serves as a flexible framework for integrating multidimensional omics-disease associations, functional genomics, canonical pathways and gene-gene interaction networks to generate mechanistic hypotheses. It includes two main parts, 1) Marker set enrichment analysis (MSEA); 2) Weighted Key Driver Analysis (wKDA).

Author: Ville-Petteri Makinen, Le Shu, Yuqi Zhao, Zeyneb Kurt, Bin Zhang, Xia Yang

Maintainer: Zeyneb Kurt <zeynebkurt at gmail.com>

Citation (from within R, enter citation("Mergeomics")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Mergeomics")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mergeomics")
Mergeomics PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software
Version 1.30.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>= 2)
Depends R (>= 3.0.1)
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Suggests RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Mergeomics_1.30.0.tar.gz
Windows Binary Mergeomics_1.30.0.zip
macOS Binary (x86_64) Mergeomics_1.30.0.tgz
macOS Binary (arm64) Mergeomics_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Mergeomics
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Mergeomics
Bioc Package Browser https://code.bioconductor.org/browse/Mergeomics/
Package Short Url https://bioconductor.org/packages/Mergeomics/
Package Downloads Report Download Stats