MetaVolcanoR
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
Gene Expression Meta-analysis Visualization Tool
Bioconductor version: Release (3.19)
MetaVolcanoR combines differential gene expression results. It implements three strategies to summarize differential gene expression from different studies. i) Random Effects Model (REM) approach, ii) a p-value combining-approach, and iii) a vote-counting approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.
Author: Cesar Prada [aut, cre], Diogenes Lima [aut], Helder Nakaya [aut, ths]
Maintainer: Cesar Prada <cesar.prada.medina at gmail.com>
citation("MetaVolcanoR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MetaVolcanoR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray |
Version | 1.18.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | GPL-3 |
Depends | R (>= 4.1.1) |
Imports | methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets |
System Requirements | |
URL |
See More
Suggests | knitr, markdown, rmarkdown, testthat |
Linking To | |
Enhances | |
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Imports Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | MetaVolcanoR_1.18.0.zip (64-bit only) |
macOS Binary (x86_64) | MetaVolcanoR_1.18.0.tgz |
macOS Binary (arm64) | MetaVolcanoR_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MetaVolcanoR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MetaVolcanoR |
Package Short Url | https://bioconductor.org/packages/MetaVolcanoR/ |
Package Downloads Report | Download Stats |