PAIRADISE

This is the released version of PAIRADISE; for the devel version, see PAIRADISE.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9

PAIRADISE: Paired analysis of differential isoform expression

Bioconductor version: Release (3.23)

This package implements the PAIRADISE procedure for detecting differential isoform expression between matched replicates in paired RNA-Seq data.

Author: Levon Demirdjian, Ying Nian Wu, Yi Xing

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>, Levon Demirdjian <levondem at ucla.edu>

Citation (from within R, enter citation("PAIRADISE")):

Levon Demirdjian, Ying Nian Wu, Yi Xing. PAIRADISE: PAIRADISE: Paired analysis of differential isoform expression. doi:10.18129/B9.bioc.PAIRADISE, R package version 1.28.0, https://bioconductor.org/packages/PAIRADISE.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PAIRADISE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PAIRADISE")

PAIRADISE	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AlternativeSplicing, DifferentialExpression, ImmunoOncology, RNASeq, Software, StatisticalMethod
Version	1.28.0
In Bioconductor since	BioC 3.9 (R-3.6) (7.5 years)
License	MIT + file LICENSE
Depends	R (>= 3.6), nloptr
Imports	SummarizedExperiment, S4Vectors, stats, methods, abind, BiocParallel
System Requirements
URL

Suggests	testthat, knitr, rmarkdown, BiocStyle
Linking To
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Depends On Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PAIRADISE_1.28.0.tar.gz
Windows Binary (x86_64)	PAIRADISE_1.28.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	PAIRADISE_1.28.0.tgz
macOS Binary (sonoma-arm64)	PAIRADISE_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PAIRADISE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PAIRADISE
Package Short Url	https://bioconductor.org/packages/PAIRADISE/
Package Downloads Report	Download Stats