Registration Open for Bioc2024 July 24-26


Prediction of pathway-related protein-protein interaction networks

Bioconductor version: Release (3.19)

Package to predict protein-protein interaction (PPI) networks in target organisms for which only a view information about PPIs is available. Path2PPI predicts PPI networks based on sets of proteins which can belong to a certain pathway from well-established model organisms. It helps to combine and transfer information of a certain pathway or biological process from several reference organisms to one target organism. Path2PPI only depends on the sequence similarity of the involved proteins.

Author: Oliver Philipp [aut, cre], Ina Koch [ctb]

Maintainer: Oliver Philipp <contact at>

Citation (from within R, enter citation("Path2PPI")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Path2PPI - A brief tutorial HTML R Script
Reference Manual PDF


biocViews Network, NetworkInference, Pathways, Proteomics, Software, SystemsBiology
Version 1.34.0
In Bioconductor since BioC 3.2 (R-3.2) (9 years)
License GPL (>= 2)
Depends R (>= 3.2.1), igraph (>= 1.0.1), methods
System Requirements
See More
Suggests knitr, rmarkdown, RUnit, BiocGenerics, BiocStyle
Linking To
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Path2PPI_1.34.0.tar.gz
Windows Binary
macOS Binary (x86_64) Path2PPI_1.34.0.tgz
macOS Binary (arm64) Path2PPI_1.34.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Bioc Package Browser
Package Short Url
Package Downloads Report Download Stats