DOI: 10.18129/B9.bioc.R3CPET    

3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process

Bioconductor version: Release (3.6)

The package provides a method to infer the set of proteins that are more probably to work together to maintain chormatin interaction given a ChIA-PET experiment results.

Author: Djekidel MN, Yang Chen et al.

Maintainer: Mohamed Nadhir Djekidel <djek.nad at gmail.com>

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PDF R Script 3CPET: Finding Co-factor Complexes maintaining Chia-PET interactions
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biocViews Bayesian, GeneExpression, GenePrediction, GraphAndNetwork, HiC, Network, NetworkInference, Software
Version 1.10.0
In Bioconductor since BioC 3.1 (R-3.2) (3 years)
License GPL (>=2)
Depends R (>= 3.2), Rcpp (>= 0.10.4), methods
Imports methods, parallel, clues, ggplot2, pheatmap, clValid, igraph, data.table, reshape2, Hmisc, RCurl, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, ggbio
LinkingTo Rcpp
Suggests BiocStyle, knitr, TxDb.Hsapiens.UCSC.hg19.knownGene, biovizBase, biomaRt, AnnotationDbi, org.Hs.eg.db, shiny, ChIPpeakAnno
BugReports https://github.com/sirusb/R3CPET/issues
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Source Package R3CPET_1.10.0.tar.gz
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