RBedMethyl
This is the released version of RBedMethyl; for the devel version, see RBedMethyl.
Disk-backed Representation of ONT bedMethyl Files
Bioconductor version: Release (3.23)
Bioconductor-native infrastructure for handling large nanoporetech modkit bedMethyl pileup files from ONT data using HDF5Array and DelayedArray.
Author: Vasileios Lemonidis [aut, cre, cph] 
, Center for Oncological Research, University of Antwerp [cph, fnd], Stichting Tegen Kanker [fnd]
Maintainer: Vasileios Lemonidis <vasileios.lemonidis at uantwerpen.be>
citation("RBedMethyl")):Vasileios Lemonidis. RBedMethyl: Disk-backed Representation of ONT bedMethyl Files. doi:10.18129/B9.bioc.RBedMethyl, R package version 1.0.0, https://bioconductor.org/packages/RBedMethyl.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBedMethyl")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RBedMethyl")| ONT-scale workflows with RBedMethyl | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, Infrastructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.23 (R-4.6) (< 6 months) |
| License | GPL (>= 2) |
| Depends | |
| Imports | methods, HDF5Array, rhdf5, DelayedArray, DelayedMatrixStats, SummarizedExperiment, bsseq, GenomicRanges, S4Vectors, IRanges, data.table |
| System Requirements | |
| URL | https://github.com/CMG-UA/RBedMethyl |
| Bug Reports | https://github.com/CMG-UA/RBedMethyl/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RBedMethyl_1.0.0.tar.gz |
| Windows Binary (x86_64) | RBedMethyl_1.0.0.zip |
| macOS Binary (big-sur-x86_64) | RBedMethyl_1.0.0.tgz |
| macOS Binary (sonoma-arm64) | RBedMethyl_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RBedMethyl |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RBedMethyl |
| Package Short Url | https://bioconductor.org/packages/RBedMethyl/ |
| Package Downloads Report | Download Stats |