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RcwlPipelines

Bioinformatics pipelines based on Rcwl


Bioconductor version: Release (3.18)

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Author: Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("RcwlPipelines")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RcwlPipelines")
RcwlPipelines HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep
Version 1.18.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-2
Depends R (>= 3.6), Rcwl, BiocFileCache
Imports rappdirs, methods, utils, git2r, httr, S4Vectors
System Requirements nodejs
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Suggests testthat, knitr, rmarkdown, BiocStyle
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Depends On Me
Imports Me ReUseData
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RcwlPipelines_1.18.0.tar.gz
Windows Binary
macOS Binary (x86_64) RcwlPipelines_1.18.0.tgz
macOS Binary (arm64) RcwlPipelines_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RcwlPipelines
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RcwlPipelines
Bioc Package Browser https://code.bioconductor.org/browse/RcwlPipelines/
Package Short Url https://bioconductor.org/packages/RcwlPipelines/
Package Downloads Report Download Stats