To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

In most cases, you don't need to download the package archive at all.

ReactomePA

DOI: 10.18129/B9.bioc.ReactomePA    

Reactome Pathway Analysis

Bioconductor version: Release (3.5)

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Author: Guangchuang Yu [aut, cre], Vladislav Petyuk [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("ReactomePA")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ReactomePA")

Documentation

HTML R Script An R package for Reactome Pathway Analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews Annotation, GeneSetEnrichment, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 1.20.2
In Bioconductor since BioC 2.10 (R-2.15) (5.5 years)
License GPL-2
Depends R (>= 3.3.1), DOSE(>= 3.0.0)
Imports AnnotationDbi, reactome.db, igraph, graphite
LinkingTo
Suggests BiocStyle, clusterProfiler, knitr, org.Hs.eg.db, testthat
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/ReactomePA
BugReports https://github.com/GuangchuangYu/ReactomePA/issues
Depends On Me
Imports Me bioCancer, LINC
Suggests Me ChIPseeker, CINdex, clusterProfiler
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ReactomePA_1.20.2.tar.gz
Windows Binary ReactomePA_1.20.2.zip
Mac OS X 10.11 (El Capitan) ReactomePA_1.20.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ReactomePA
Package Short Url http://bioconductor.org/packages/ReactomePA/
Package Downloads Report Download Stats

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