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Interactive visualization and manipulation of nested networks

Bioconductor version: Release (3.19)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.

Author: Xin Wang [ctb], Florian Markowetz [ctb], Mauro Castro [aut, cre]

Maintainer: Mauro Castro <mauro.a.castro at>

Citation (from within R, enter citation("RedeR")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

RedeR: nested networks HTML R Script
Reference Manual PDF


biocViews GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology
Version 3.0.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-3
Depends R (>= 4.0), methods
Imports scales, igraph
System Requirements Java Runtime Environment (Java>= 11)
See More
Suggests knitr, rmarkdown, markdown, BiocStyle, TreeAndLeaf
Linking To
Depends On Me Fletcher2013b, dc3net
Imports Me PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me RGraphSpace
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_3.0.0.tar.gz
Windows Binary (64-bit only)
macOS Binary (x86_64) RedeR_3.0.0.tgz
macOS Binary (arm64) RedeR_3.0.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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