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Interactive visualization and manipulation of nested networks

Bioconductor version: Release (3.18)

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at>

Citation (from within R, enter citation("RedeR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

RedeR: hierarchical networks HTML R Script
Reference Manual PDF


biocViews GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology
Version 2.6.1
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL (>= 3)
Depends R (>= 4.0), methods
Imports igraph
System Requirements Java Runtime Environment (Java>= 11)
See More
Suggests BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
Linking To
Depends On Me Fletcher2013b
Imports Me PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me RGraphSpace
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RedeR_2.6.1.tar.gz
Windows Binary
macOS Binary (x86_64) RedeR_2.6.1.tgz
macOS Binary (arm64) RedeR_2.6.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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Old Source Packages for BioC 3.18 Source Archive