RedeR
Interactive visualization and manipulation of nested networks
Bioconductor version: Release (3.19)
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.
Author: Xin Wang [ctb], Florian Markowetz [ctb], Mauro Castro [aut, cre]
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
citation("RedeR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RedeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RedeR")
RedeR: nested networks | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology |
Version | 3.0.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (13 years) |
License | GPL-3 |
Depends | R (>= 4.0), methods |
Imports | scales, igraph |
System Requirements | Java Runtime Environment (Java>= 11) |
URL | https://doi.org/10.1186/gb-2012-13-4-r29 |
See More
Suggests | knitr, rmarkdown, markdown, BiocStyle, TreeAndLeaf |
Linking To | |
Enhances | |
Depends On Me | Fletcher2013b, dc3net |
Imports Me | PANR, RTN, transcriptogramer, TreeAndLeaf |
Suggests Me | PathwaySpace |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | RedeR_3.0.0.tar.gz |
Windows Binary | RedeR_3.0.0.zip (64-bit only) |
macOS Binary (x86_64) | RedeR_3.0.0.tgz |
macOS Binary (arm64) | RedeR_3.0.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RedeR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RedeR |
Bioc Package Browser | https://code.bioconductor.org/browse/RedeR/ |
Package Short Url | https://bioconductor.org/packages/RedeR/ |
Package Downloads Report | Download Stats |