Rqc
Quality Control Tool for High-Throughput Sequencing Data
Bioconductor version: Release (3.19)
Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Author: Welliton Souza, Benilton Carvalho <beniltoncarvalho at gmail.com>
Maintainer: Welliton Souza <well309 at gmail.com>
Citation (from within R, enter
citation("Rqc")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rqc")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rqc")
Using Rqc | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DataImport, QualityControl, Sequencing, Software |
Version | 1.38.0 |
In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
License | GPL (>= 2) |
Depends | BiocParallel, ShortRead, ggplot2 |
Imports | BiocGenerics(>= 0.25.1), Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles |
System Requirements | |
URL | https://github.com/labbcb/Rqc |
Bug Reports | https://github.com/labbcb/Rqc/issues |
See More
Suggests | rmarkdown, testthat |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Rqc_1.38.0.tar.gz |
Windows Binary | Rqc_1.38.0.zip |
macOS Binary (x86_64) | Rqc_1.38.0.tgz |
macOS Binary (arm64) | Rqc_1.38.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Rqc |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rqc |
Bioc Package Browser | https://code.bioconductor.org/browse/Rqc/ |
Package Short Url | https://bioconductor.org/packages/Rqc/ |
Package Downloads Report | Download Stats |