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SANTA

This is the released version of SANTA; for the devel version, see SANTA.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12

Spatial Analysis of Network Associations

DOI: 10.18129/B9.bioc.SANTA

Bioconductor version: Release (3.23)

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex Cornish [cre, aut]

Maintainer: Alex Cornish <alexcornish88 at gmail.com>

Citation (from within R, enter citation("SANTA")):

Alex Cornish. SANTA: Spatial Analysis of Network Associations. doi:10.18129/B9.bioc.SANTA, R package version 2.48.0, https://bioconductor.org/packages/SANTA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SANTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")

Details

Package Archives

Follow Installation instructions to use this package in your R session.