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SIMAT

This is the released version of SIMAT; for the devel version, see SIMAT.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

GC-SIM-MS data processing and alaysis tool

DOI: 10.18129/B9.bioc.SIMAT

Bioconductor version: Release (3.23)

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Author: M. R. Nezami Ranjbar <nranjbar at vt.edu>

Maintainer: M. R. Nezami Ranjbar <nranjbar at vt.edu>

Citation (from within R, enter citation("SIMAT")):

M. R. Nezami Ranjbar. SIMAT: GC-SIM-MS data processing and alaysis tool. doi:10.18129/B9.bioc.SIMAT, R package version 1.44.0, https://bioconductor.org/packages/SIMAT.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SIMAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SIMAT")

Details

Package Archives

Follow Installation instructions to use this package in your R session.