SMAD
Statistical Modelling of AP-MS Data (SMAD)
Bioconductor version: Release (3.19)
Assigning probability scores to protein interactions captured in affinity purification mass spectrometry (AP-MS) expriments to infer protein-protein interactions. The output would facilitate non-specific background removal as contaminants are commonly found in AP-MS data.
Author: Qingzhou Zhang [aut, cre]
Maintainer: Qingzhou Zhang <zqzneptune at hotmail.com>
citation("SMAD")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SMAD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SMAD")
SMAD Quick Start | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | MassSpectrometry, Proteomics, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
License | MIT + file LICENSE |
Depends | R (>= 3.6.0), RcppAlgos |
Imports | magrittr (>= 1.5), dplyr, stats, tidyr, utils, Rcpp (>= 1.0.0) |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, testthat, BiocStyle |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SMAD_1.20.0.tar.gz |
Windows Binary | SMAD_1.20.0.zip (64-bit only) |
macOS Binary (x86_64) | SMAD_1.20.0.tgz |
macOS Binary (arm64) | SMAD_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SMAD |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SMAD |
Bioc Package Browser | https://code.bioconductor.org/browse/SMAD/ |
Package Short Url | https://bioconductor.org/packages/SMAD/ |
Package Downloads Report | Download Stats |