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SemDist

This is the released version of SemDist; for the devel version, see SemDist.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Information Accretion-based Function Predictor Evaluation

DOI: 10.18129/B9.bioc.SemDist

Bioconductor version: Release (3.23)

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Citation (from within R, enter citation("SemDist")):

Ian Gonzalez and Wyatt Clark. SemDist: Information Accretion-based Function Predictor Evaluation. doi:10.18129/B9.bioc.SemDist, R package version 1.46.0, https://bioconductor.org/packages/SemDist.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SemDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")

Details

Package Archives

Follow Installation instructions to use this package in your R session.