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SemDist

Information Accretion-based Function Predictor Evaluation


Bioconductor version: Release (3.18)

This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.

Author: Ian Gonzalez and Wyatt Clark

Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>

Citation (from within R, enter citation("SemDist")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SemDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SemDist")
introduction.pdf PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, Classification, GO, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 2)
Depends R (>= 3.1), AnnotationDbi, GO.db, annotate
Imports
System Requirements
URL http://github.com/iangonzalez/SemDist
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Suggests GOSemSim
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SemDist_1.36.0.tar.gz
Windows Binary SemDist_1.36.0.zip (64-bit only)
macOS Binary (x86_64) SemDist_1.36.0.tgz
macOS Binary (arm64) SemDist_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SemDist
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SemDist
Bioc Package Browser https://code.bioconductor.org/browse/SemDist/
Package Short Url https://bioconductor.org/packages/SemDist/
Package Downloads Report Download Stats