SynExtend

DOI: 10.18129/B9.bioc.SynExtend    

Tools for Working With Synteny Objects

Bioconductor version: Release (3.12)

Shared order between genomic sequences provide a great deal of information. Synteny objects produced by the R package DECIPHER provides quantitative information about that shared order. SynExtend provides tools for extracting information from Synteny objects.

Author: Nicholas Cooley [aut, cre] , Adelle Fernando [ctb], Erik Wright [aut]

Maintainer: Nicholas Cooley <npc19 at pitt.edu>

Citation (from within R, enter citation("SynExtend")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SynExtend")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SynExtend")

 

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Details

biocViews Clustering, ComparativeGenomics, DataImport, Genetics, Software
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License GPL-3
Depends R (>= 4.0.0), DECIPHER(>= 2.14.0), igraph (>= 1.2.4.1)
Imports methods, Biostrings, S4Vectors, IRanges, utils, stats
LinkingTo
Suggests knitr
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Depends On Me
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Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SynExtend_1.2.0.tar.gz
Windows Binary SynExtend_1.2.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) SynExtend_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SynExtend
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SynExtend
Package Short Url https://bioconductor.org/packages/SynExtend/
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