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Transcription Factors Association Rules Miner

Bioconductor version: Release (3.19)

It searches for relevant associations of transcription factors with a transcription factor target, in specific genomic regions. It also allows to evaluate the Importance Index distribution of transcription factors (and combinations of transcription factors) in association rules.

Author: Liuba Nausicaa Martino, Alice Parodi, Gaia Ceddia, Piercesare Secchi, Stefano Campaner, Marco Masseroli

Maintainer: Liuba Nausicaa Martino <liuban.martino at>

Citation (from within R, enter citation("TFARM")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

Transcription Factor Association Rule Miner PDF R Script
Reference Manual PDF


biocViews BiologicalQuestion, Infrastructure, Software, StatisticalMethod, Transcription
Version 1.26.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports arules, fields, GenomicRanges, graphics, stringr, methods, stats, gplots
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Suggests BiocStyle, knitr, plyr
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Follow Installation instructions to use this package in your R session.

Source Package TFARM_1.26.0.tar.gz
Windows Binary
macOS Binary (x86_64) TFARM_1.26.0.tgz
macOS Binary (arm64) TFARM_1.26.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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