TRESS

This is the released version of TRESS; for the devel version, see TRESS.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

Toolbox for mRNA epigenetics sequencing analysis

Bioconductor version: Release (3.23)

This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.

Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]

Maintainer: Zhenxing Guo <guozhenxing at cuhk.edu.cn>

Citation (from within R, enter citation("TRESS")):

Zhenxing Guo. TRESS: Toolbox for mRNA epigenetics sequencing analysis. doi:10.18129/B9.bioc.TRESS, R package version 1.18.0, https://bioconductor.org/packages/TRESS.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software
Version	1.18.0
In Bioconductor since	BioC 3.14 (R-4.1) (5 years)
License	GPL-3 + file LICENSE
Depends	R (>= 4.1.0), parallel, S4Vectors
Imports	utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	magpie
Suggests Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TRESS_1.18.0.tar.gz
Windows Binary (x86_64)	TRESS_1.18.0.zip
macOS Binary (big-sur-x86_64)	TRESS_1.18.0.tgz
macOS Binary (sonoma-arm64)	TRESS_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TRESS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TRESS
Package Short Url	https://bioconductor.org/packages/TRESS/
Package Downloads Report	Download Stats