TSAR

DOI: 10.18129/B9.bioc.TSAR  

Thermal Shift Analysis in R

Bioconductor version: Release (3.18)

This package automates analysis workflow for Thermal Shift Analysis (TSAS) data. Processing, analyzing, and visualizing data through both shiny applications and command lines. Package aims to simplify data analysis and offer front to end workflow, from raw data to multiple trial analysis.

Author: Xinlin Gao [aut, cre] , William M. McFadden [aut, fnd] , Stefan G. Sarafianos [fnd, aut, ths]

Maintainer: Xinlin Gao <candygao2015 at outlook.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TSAR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSAR")

 

HTML	R Script	Frequently Asked Questions
HTML	R Script	TSAR Package Structure
HTML	R Script	TSAR Workflow by Command
HTML	R Script	TSAR Workflow by Shiny
PDF		Reference Manual
Text		NEWS

Details

biocViews	ShinyApps, Software, Visualization, qPCR
Version	1.0.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	AGPL-3
Depends	R (>= 4.3.0)
Imports	dplyr (>= 1.0.7), ggplot2 (>= 3.3.5), ggpubr (>= 0.4.0), magrittr (>= 2.0.3), mgcv (>= 1.8.38), readxl (>= 1.4.0), stringr (>= 1.4.0), tidyr (>= 1.1.4), utils (>= 4.3.1), shiny (>= 1.7.4.1), plotly (>= 4.10.2), shinyjs (>= 2.1.0), jsonlite (>= 1.8.7), rhandsontable (>= 0.3.8), openxlsx (>= 4.2.5.2), shinyWidgets (>= 0.7.6), minpack.lm (>= 1.2.3)
LinkingTo
Suggests	knitr, rmarkdown, testthat (>= 3.0.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TSAR_1.0.0.tar.gz
Windows Binary	TSAR_1.0.0.zip
macOS Binary (x86_64)	TSAR_1.0.0.tgz
macOS Binary (arm64)	TSAR_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TSAR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TSAR
Bioc Package Browser	https://code.bioconductor.org/browse/TSAR/
Package Short Url	https://bioconductor.org/packages/TSAR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.18	Source Archive