bayNorm

Single-cell RNA sequencing data normalization


Bioconductor version: Release (3.19)

bayNorm is used for normalizing single-cell RNA-seq data.

Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

Maintainer: Wenhao Tang <wt215 at ic.ac.uk>

Citation (from within R, enter citation("bayNorm")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bayNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bayNorm")
Introduction to bayNorm HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software
Version 1.22.0
In Bioconductor since BioC 3.8 (R-3.5) (6 years)
License GPL (>= 2)
Depends R (>= 3.5)
Imports Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
System Requirements
URL https://github.com/WT215/bayNorm
Bug Reports https://github.com/WT215/bayNorm/issues
See More
Suggests knitr, rmarkdown, BiocStyle, devtools, testthat
Linking To Rcpp, RcppArmadillo, RcppProgress
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bayNorm_1.22.0.tar.gz
Windows Binary (x86_64) bayNorm_1.22.0.zip (64-bit only)
macOS Binary (x86_64) bayNorm_1.22.0.tgz
macOS Binary (arm64) bayNorm_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bayNorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bayNorm
Bioc Package Browser https://code.bioconductor.org/browse/bayNorm/
Package Short Url https://bioconductor.org/packages/bayNorm/
Package Downloads Report Download Stats