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bigmelon

Illumina methylation array analysis for large experiments


Bioconductor version: Release (3.18)

Methods for working with Illumina arrays using gdsfmt.

Author: Tyler J. Gorrie-Stone [aut], Ayden Saffari [aut], Karim Malki [aut], Leonard C. Schalkwyk [cre, aut]

Maintainer: Leonard C. Schalkwyk <lschal at essex.ac.uk>

Citation (from within R, enter citation("bigmelon")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bigmelon")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bigmelon")
The bigmelon Package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CpGIsland, DNAMethylation, DataImport, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version 1.28.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License GPL-3
Depends R (>= 3.3), wateRmelon(>= 1.25.0), gdsfmt(>= 1.0.4), methods, minfi(>= 1.21.0), Biobase, methylumi
Imports stats, utils, GEOquery, graphics, BiocGenerics, illuminaio
System Requirements
URL
See More
Suggests BiocGenerics, RUnit, BiocStyle, minfiData, parallel, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, bumphunter
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package bigmelon_1.28.0.tar.gz
Windows Binary bigmelon_1.28.0.zip
macOS Binary (x86_64) bigmelon_1.28.0.tgz
macOS Binary (arm64) bigmelon_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/bigmelon
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bigmelon
Bioc Package Browser https://code.bioconductor.org/browse/bigmelon/
Package Short Url https://bioconductor.org/packages/bigmelon/
Package Downloads Report Download Stats