biobtreeR

DOI: 10.18129/B9.bioc.biobtreeR    

Using biobtree tool from R

Bioconductor version: Release (3.12)

The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.

Author: Tamer Gur

Maintainer: Tamer Gur <tgur at ebi.ac.uk>

Citation (from within R, enter citation("biobtreeR")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biobtreeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biobtreeR")

 

HTML R Script The biobtreeR users guide
PDF   Reference Manual
Text   LICENSE

Details

biocViews Annotation, Software
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (0.5 years)
License MIT + file LICENSE
Depends
Imports httr, httpuv, stringi, jsonlite, methods, utils
LinkingTo
Suggests BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL https://github.com/tamerh/biobtreeR
BugReports https://github.com/tamerh/biobtreeR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package biobtreeR_1.2.0.tar.gz
Windows Binary biobtreeR_1.2.0.zip
macOS 10.13 (High Sierra) biobtreeR_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/biobtreeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/biobtreeR
Package Short Url https://bioconductor.org/packages/biobtreeR/
Package Downloads Report Download Stats

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