cellxgenedp

DOI: 10.18129/B9.bioc.cellxgenedp    

Discover and Access Single Cell Data Sets in the cellxgene Data Portal

Bioconductor version: Release (3.15)

The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut], Daniel Parker [aut, cph] (jsoncons C++ library creator)

Maintainer: Martin Morgan <mtmorgan.bioc at gmail.com>

Citation (from within R, enter citation("cellxgenedp")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellxgenedp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellxgenedp")

 

HTML R Script Discover and download datasets and files from the cellxgene data portal
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews DataImport, SingleCell, Software, ThirdPartyClient
Version 1.0.1
In Bioconductor since BioC 3.15 (R-4.2) (< 6 months)
License Artistic-2.0 | BSL-1.0 | file LICENSE
Depends
Imports dplyr, httr, curl, jsonlite, utils, tools, parallel, shiny, DT
LinkingTo cpp11
Suggests zellkonverter, SingleCellExperiment, HDF5Array, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), mockery
SystemRequirements C++14
Enhances
URL
Depends On Me
Imports Me UniProt.ws
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cellxgenedp_1.0.1.tar.gz
Windows Binary cellxgenedp_1.0.1.zip (64-bit only)
macOS Binary (x86_64) cellxgenedp_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/cellxgenedp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cellxgenedp
Package Short Url https://bioconductor.org/packages/cellxgenedp/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive

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