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Gene Set Analysis of (Rare) Copy Number Variants

Bioconductor version: Release (3.18)

This package is intended to facilitate gene-set association with rare CNVs in case-control studies.

Author: Daniele Merico <daniele.merico at gmail.com>, Robert Ziman <rziman at gmail.com>; packaged by Joseph Lugo <joseph.r.lugo at gmail.com>

Maintainer: Joseph Lugo <joseph.r.lugo at gmail.com>

Citation (from within R, enter citation("cnvGSA")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

cnvGSA - Gene-Set Analysis of Rare Copy Number Variants PDF
cnvGSAUsersGuide.pdf PDF
Reference Manual PDF


biocViews MultipleComparison, Software
Version 1.46.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License LGPL
Depends brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape
System Requirements
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Suggests cnvGSAdata, org.Hs.eg.db
Linking To
Depends On Me cnvGSAdata
Imports Me
Suggests Me
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Follow Installation instructions to use this package in your R session.

Source Package cnvGSA_1.46.0.tar.gz
Windows Binary cnvGSA_1.46.0.zip (64-bit only)
macOS Binary (x86_64) cnvGSA_1.46.0.tgz
macOS Binary (arm64) cnvGSA_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/cnvGSA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cnvGSA
Bioc Package Browser https://code.bioconductor.org/browse/cnvGSA/
Package Short Url https://bioconductor.org/packages/cnvGSA/
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