dagLogo

This is the released version of dagLogo; for the devel version, see dagLogo.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory

Bioconductor version: Release (3.23)

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Author: Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu

Maintainer: Jianhong Ou <jou at morgridge.org>

Citation (from within R, enter citation("dagLogo")):

Jianhong Ou, Haibo Liu, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu. dagLogo: dagLogo: a Bioconductor package for visualizing conserved amino acid sequence pattern in groups based on probability theory. doi:10.18129/B9.bioc.dagLogo, R package version 1.50.0, https://bioconductor.org/packages/dagLogo.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dagLogo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

dagLogo Vignette	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	SequenceMatching, Software, Visualization
Version	1.50.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL (>=2)
Depends	R (>= 3.0.1), methods, grid
Imports	pheatmap, Biostrings, UniProt.ws, BiocGenerics, utils, biomaRt, motifStack, httr
System Requirements
URL

Suggests	XML, grImport, grImport2, BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dagLogo_1.50.0.tar.gz
Windows Binary (x86_64)	dagLogo_1.50.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	dagLogo_1.50.0.tgz
macOS Binary (sonoma-arm64)	dagLogo_1.50.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dagLogo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dagLogo
Package Short Url	https://bioconductor.org/packages/dagLogo/
Package Downloads Report	Download Stats