flowAI

This is the released version of flowAI; for the devel version, see flowAI.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Automatic and interactive quality control for flow cytometry data

Bioconductor version: Release (3.23)

The package is able to perform an automatic or interactive quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: 1) flow rate, 2) signal acquisition, 3) dynamic range, the quality control enables the detection and removal of anomalies.

Author: Gianni Monaco [aut], Chen Hao [ctb]

Maintainer: Gianni Monaco <mongianni1 at gmail.com>

Citation (from within R, enter citation("flowAI")):

Gianni Monaco. flowAI: Automatic and interactive quality control for flow cytometry data. doi:10.18129/B9.bioc.flowAI, R package version 1.42.0, https://bioconductor.org/packages/flowAI.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowAI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowAI")

Automatic and GUI methods to do quality control on Flow cytometry Data	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	BiomedicalInformatics, FlowCytometry, ImmunoOncology, QualityControl, Software
Version	1.42.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL (>= 2)
Depends	R (>= 4.3.0)
Imports	ggplot2, flowCore, plyr, changepoint, knitr, reshape2, RColorBrewer, scales, methods, graphics, stats, utils, rmarkdown
System Requirements
URL

Suggests	testthat, shiny, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	CytoPipeline
Suggests Me	staRgate
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowAI_1.42.0.tar.gz
Windows Binary (x86_64)	flowAI_1.42.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	flowAI_1.42.0.tgz
macOS Binary (sonoma-arm64)	flowAI_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowAI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowAI
Package Short Url	https://bioconductor.org/packages/flowAI/
Package Downloads Report	Download Stats