DOI: 10.18129/B9.bioc.globaltest    

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Bioconductor version: Release (3.6)

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari

Maintainer: Jelle Goeman <j.j.goeman at>

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PDF R Script Global Test
PDF   Reference Manual


biocViews Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software
Version 5.32.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13 years)
License GPL (>= 2)
Depends methods, survival
Imports Biobase, AnnotationDbi, annotate, graphics
Suggests vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression,, GSEABase, penalized, gss, MASS, boot, rpart
Depends On Me GlobalAncova
Imports Me BiSeq, EGSEA, SIM
Suggests Me topGO
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