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GRO-seq Analysis Pipeline

Bioconductor version: Release (3.18)

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Citation (from within R, enter citation("groHMM")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

groHMM tutorial PDF R Script
Reference Manual PDF


biocViews Sequencing, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-3
Depends R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomeInfoDb, GenomicRanges(>= 1.31.8), GenomicAlignments(>= 1.15.6), rtracklayer(>= 1.39.7)
System Requirements
URL https://github.com/Kraus-Lab/groHMM
Bug Reports https://github.com/Kraus-Lab/groHMM/issues
See More
Suggests BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package groHMM_1.36.0.tar.gz
Windows Binary groHMM_1.36.0.zip (64-bit only)
macOS Binary (x86_64) groHMM_1.36.0.tgz
macOS Binary (arm64) groHMM_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/groHMM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/groHMM
Bioc Package Browser https://code.bioconductor.org/browse/groHMM/
Package Short Url https://bioconductor.org/packages/groHMM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.18 Source Archive