immunoClust

DOI: 10.18129/B9.bioc.immunoClust    

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor version: Release (3.11)

immunoClust is a model based clustering approach for Flow Cytometry samples. The cell-events of single Flow Cytometry samples are modelled by a mixture of multinominal normal- or t-distributions. The cell-event clusters of several samples are modelled by a mixture of multinominal normal-distributions aiming stable co-clusters across these samples.

Author: Till Soerensen <till-antoni.soerensen at charite.de>

Maintainer: Till Soerensen <till-antoni.soerensen at charite.de>

Citation (from within R, enter citation("immunoClust")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("immunoClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("immunoClust")

 

PDF R Script immunoClust package
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, SingleCell, Software
Version 1.20.0
In Bioconductor since BioC 3.1 (R-3.2) (5.5 years)
License Artistic-2.0
Depends R (>= 3.6), methods, stats, graphics, grid, lattice, grDevices, flowCore
Imports
LinkingTo
Suggests BiocStyle, utils
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package immunoClust_1.20.0.tar.gz
Windows Binary immunoClust_1.20.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra) immunoClust_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/immunoClust
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/immunoClust
Package Short Url https://bioconductor.org/packages/immunoClust/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

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