ldblock

This is the released version of ldblock; for the devel version, see ldblock.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

data structures for linkage disequilibrium measures in populations

Bioconductor version: Release (3.23)

Define data structures for linkage disequilibrium measures in populations.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("ldblock")):

VJ Carey. ldblock: data structures for linkage disequilibrium measures in populations. doi:10.18129/B9.bioc.ldblock, R package version 1.42.0, https://bioconductor.org/packages/ldblock.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ldblock")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ldblock")

ldblock package: linkage disequilibrium data structures	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software
Version	1.42.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	Artistic-2.0
Depends	R (>= 3.5), methods, rlang
Imports	BiocGenerics (>= 0.25.1), Seqinfo, httr, Matrix
System Requirements
URL

Suggests	RUnit, knitr, BiocStyle, gwascat, rmarkdown, snpStats, VariantAnnotation, GenomeInfoDb, ensembldb, EnsDb.Hsapiens.v75, Rsamtools, GenomicFiles (>= 1.13.6)
Linking To
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ldblock_1.42.0.tar.gz
Windows Binary (x86_64)	ldblock_1.42.0.zip
macOS Binary (big-sur-x86_64)	ldblock_1.42.0.tgz
macOS Binary (sonoma-arm64)	ldblock_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ldblock
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ldblock
Package Short Url	https://bioconductor.org/packages/ldblock/
Package Downloads Report	Download Stats