levi
Landscape Expression Visualization Interface
Bioconductor version: Release (3.19)
The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.
Author: Rafael Pilan [aut], Isabelle Silva [ctb], Agnes Takeda [ctb], Jose Rybarczyk Filho [ctb, cre, ths]
Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>
Citation (from within R, enter
citation("levi")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("levi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("levi")
Using levi | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | GeneExpression, Network, Sequencing, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.8 (R-3.5) (6 years) |
License | GPL (>= 2) |
Depends | |
Imports | DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods, rmarkdown |
System Requirements | |
URL |
See More
Suggests | rmarkdown, BiocStyle |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | levi_1.22.0.tar.gz |
Windows Binary | levi_1.22.0.zip |
macOS Binary (x86_64) | levi_1.22.0.tgz |
macOS Binary (arm64) | levi_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/levi |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/levi |
Bioc Package Browser | https://code.bioconductor.org/browse/levi/ |
Package Short Url | https://bioconductor.org/packages/levi/ |
Package Downloads Report | Download Stats |