made4
Multivariate analysis of microarray data using ADE4
Bioconductor version: Release (3.19)
Multivariate data analysis and graphical display of microarray data. Functions include for supervised dimension reduction (between group analysis) and joint dimension reduction of 2 datasets (coinertia analysis). It contains functions that require R package ade4.
Author: Aedin Culhane
Maintainer: Aedin Culhane <Aedin at jimmy.harvard.edu>
Citation (from within R, enter
citation("made4")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("made4")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("made4")
Authoring R Markdown vignettes | HTML | R Script |
Reference Manual |
Details
biocViews | Classification, Clustering, DimensionReduction, GeneExpression, Microarray, MultipleComparison, PrincipalComponent, Sequencing, Software, Transcriptomics |
Version | 1.78.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19.5 years) |
License | Artistic-2.0 |
Depends | RColorBrewer, gplots, scatterplot3d, Biobase, SummarizedExperiment |
Imports | ade4 |
System Requirements | |
URL | http://www.hsph.harvard.edu/aedin-culhane/ |
See More
Suggests | affy, BiocStyle, knitr, rmarkdown |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | omicade4 |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | made4_1.78.0.tar.gz |
Windows Binary | made4_1.78.0.zip |
macOS Binary (x86_64) | made4_1.78.0.tgz |
macOS Binary (arm64) | made4_1.78.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/made4 |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/made4 |
Bioc Package Browser | https://code.bioconductor.org/browse/made4/ |
Package Short Url | https://bioconductor.org/packages/made4/ |
Package Downloads Report | Download Stats |